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web-based data analysis platform -- 2

Want to build a web-based data analysis platform. Basic idea is the user visits the homepage. There is a prompt saying "click here to upload your data". After uploading, and analysis is run using linux-based open source tools. Then their results are displayed and they're allowed to downlaod their analyses. I can send you examples of similar sites with the similar functionality. Is that something you all could do?

We are the National Institute of Standards and Technology. We produce reference materials and reference data for the entire US. The site we're building will be for internal use only. Behind a firewall. Won't be available to the public

Content:

Here is some content for the site. And an image attached

iBioCloud Tool for Analyzing Data for RM8376

The goal is to build a web-based, friendly interface that allows users to analyze their raw data generated from RM8376. This same interface displays results that are meaningful and visually insightful. This cloud analytics tool will run from a NIST AWS instance with >100GB of RAM and >24 processors to maximize efficiency (reduce analysis time). Initially this tool will be behind the NIST firewall, but eventually it could be made available to outside customers.

Option of using Amazon S3 buckets to house data, rather than storing directly on EC2 instance.

In short, this tool will perform the following processes:

Take raw data and metadata as input from the user (upload fastq file and enter metadata).

Performed file size check, & quality filter using seqtk. Generates a new filtered fastq file

Map reads to each reference genome using bowtie2. Generates 1 sam files

Convert sam file to bam file using samtools

Sort bam files using samtools

Perform mapping summary using QualiMap tool. Generates .html report

Display QualiMap reports

Reports relative abundance of each (from genome coverage)

Before you start:

Install on Linux Ubuntu EC2 instance:

Environments modules for version control of software

bowtie2

QualiMap

seqtk

samtools

R?

On the EC2 instance (or S3 bucket), establish permanent folder of reference genomes

All RM8376 genomes (20) are present as fasta files

Index each genome using bowtie2 (use “bowtie2-build” command). Indexed genomes will have the .bt2 extension. Note that multiple bt2 files will be generated for each genome

This only needs to be done once and this folder should contain 20 fasta files and all the corresponding .bt2 files

Set user files to delete after 30 days?

Kĩ năng: PHP, Quản trị hệ thống, Linux, Kiến trúc phần mềm, MySQL

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Về Bên Thuê:
( 0 nhận xét ) Dallas, United States

ID dự án: #26551237

12 freelancer đang chào giá trung bình $696 cho công việc này

seekdeveloper

Hi, I have read your post and understood your requirement. Looking for the freelancer to work on your next project? Or just need some issues/bugs/fixes ASAP? I have 11+ years of software experience in fortune 500 comp Thêm

$750 USD trong 7 ngày
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8.8
AwaisChaudhry

Hi, I have read the brief details on the job listing. I am a full stack developer with 9 years of coding experience. I have worked with multiple similar jobs before. I have completed 150+ major projects just on this we Thêm

$750 USD trong 21 ngày
(81 Nhận xét)
7.8
(35 Nhận xét)
6.6
ayesha0124

Hi, I have read the details I believe I can do this job. While I believe I have some queries which need to be clarified. For that I would request you to start the chat so we could clarify those. We can discuss the time Thêm

$750 USD trong 17 ngày
(15 Nhận xét)
6.2
alexsamdev

Hello, sir I am a FUll-Stack developer! My high skill is Python! I have experience in building desktop apps. And then I am also exported in the flask, Django, PyQt, Tkinter, and so on. Also, I have many experiences in Thêm

$400 USD trong 7 ngày
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5.0
octacer

Hi Sir, Its Hisham. I am a Software Engg. with more than 4 years of market experience. I have developed many web and cloud-based solutions for my clients. I have expertise in many backend and frontend languages which i Thêm

$500 USD trong 7 ngày
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4.6
PKonstiantyn

Hello! Sir Very interesting in your project “web-based data analysis platform” I am working in the powerful IT development Group and have done so many similar projects. I am good at JavaScript, python, Software Archite Thêm

$500 USD trong 7 ngày
(5 Nhận xét)
3.8
dvrocks24

Hi I have checked your project requirement regarding that you need to "Build a Dynamic website" I have more than 6+ years of experience in web development and design. I have created many websites using different tech Thêm

$250 USD trong 5 ngày
(4 Nhận xét)
1.6
woodburydev

I can suggest to use Php or Python for your project and provide the web interface and DB for the external process handling. I already have experiences with Linux as well as AWS like EC2 and S3. With my past experinece Thêm

$2000 USD trong 15 ngày
(1 Nhận xét)
1.3
samonatech

Hello, I have checked The requirement and understand that as well. I have created SIMILAR in past. Do you want to see the DEMO ??? Can will send you ?? Thanks.

$500 USD trong 7 ngày
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0.0
leonfreelance

Hi,dear. I am very interested in your project - 'web-based data analysis platform -- 2'. I've already done this kind of project before. I'm a professional programmer with 12 years of experience. If you award me, I'll i Thêm

$555 USD trong 2 ngày
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0.0
russel2102

Hi there, I went through your description and understood what you are trying to make. I made something very similar to your needs a few days ago for my personal use case. [login to view URL] user: jackie passwo Thêm

$700 USD trong 7 ngày
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0.0