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A simple python script (preferably bioinformatics)

Job Description:

I need a Python script to compare two input files that will look like the [login to view URL] and [login to view URL] to produce an [login to view URL] file.

Step 1:

- First, delete each odd line in an input file, creating a stack of lines, where each line contains only these letters: A, G, C, T and -:

For example, if an input file contains four lines:





Then the output will look like:



- Second, go letter by letter and calculate the content for column

In our example, the stack of lines:



Will be transformed into this table:

Position, A(%), T(%), G(%), C(%), -(%)

1, 50, 50, 0, 0, 0

2, 0, 100, 0, 0, 0

3, 0, 100, 0, 0, 0

4, 50, 0, 0, 0, 50

5, 0, 50, 0, 0, 50

Step 2:

When both input files are converted into their corresponding “content tables”, the script should subtract one of these tables from another to create a “difference content table”.

For example, if the first content table looks like this:

Position, A(%), T(%), G(%), C(%), -(%)

1, 50, 50, 0, 0, 0

2, 0, 100, 0, 0, 0

And the second one looks like this,

Position, A(%), T(%), G(%), C(%), -(%)

1, 50, 50, 0, 0, 0

2, 0, 50, 0, 50, 0

Then, the resulting table will look like this:

Position, A(%), T(%), G(%), C(%), -(%)

1, 0, 0, 0, 0, 0

2, 0, 50, 0, -50, 0

This resulting table should be saved as a [login to view URL] file.

Hope this is clear

Kĩ năng: Python, Data Visualization

Về khách hàng:
( 64 nhận xét ) New Haven, United States

ID dự án: #35359469

Được trao cho:


This seems like a simple data processing + file reading/writing task. I’ve worked on similar projects before but not on bioinformatics. I have experience in Python and Matlab, you can check my github below: https://gi Thêm

$18 USD trong 7 ngày
(0 Đánh Giá)

Hi there, I'm a Pharmacist and a Python programmer. I understand you need a python script that would: Input: Two files TO-DO: Calculate Consensus sequence which is the percentage of each nucleotide for each position fo Thêm

$10 USD trong 3 ngày
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11 freelancer chào giá trung bình$33 cho công việc này


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$120 USD trong 3 ngày
(16 Nhận xét)

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$20 USD trong 1 ngày
(14 Nhận xét)

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$20 USD trong 7 ngày
(15 Nhận xét)

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$20 USD trong 1 ngày
(6 Nhận xét)

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$50 USD trong 3 ngày
(2 Nhận xét)

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$30 USD trong 2 ngày
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