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A simple python script (preferably bioinformatics)

Job Description:

I need a Python script to compare two input files that will look like the [login to view URL] and [login to view URL] to produce an [login to view URL] file.

Step 1:

- First, delete each odd line in an input file, creating a stack of lines, where each line contains only these letters: A, G, C, T and -:

For example, if an input file contains four lines:

>Blablabla1

ATTA-

>Blablabla2

TTT-T

Then the output will look like:

ATTA-

TTT-T

- Second, go letter by letter and calculate the content for column

In our example, the stack of lines:

ATTA-

TTT-T

Will be transformed into this table:

Position, A(%), T(%), G(%), C(%), -(%)

1, 50, 50, 0, 0, 0

2, 0, 100, 0, 0, 0

3, 0, 100, 0, 0, 0

4, 50, 0, 0, 0, 50

5, 0, 50, 0, 0, 50

Step 2:

When both input files are converted into their corresponding “content tables”, the script should subtract one of these tables from another to create a “difference content table”.

For example, if the first content table looks like this:

Position, A(%), T(%), G(%), C(%), -(%)

1, 50, 50, 0, 0, 0

2, 0, 100, 0, 0, 0

And the second one looks like this,

Position, A(%), T(%), G(%), C(%), -(%)

1, 50, 50, 0, 0, 0

2, 0, 50, 0, 50, 0

Then, the resulting table will look like this:

Position, A(%), T(%), G(%), C(%), -(%)

1, 0, 0, 0, 0, 0

2, 0, 50, 0, -50, 0

This resulting table should be saved as a [login to view URL] file.

Hope this is clear

Kĩ năng: Python, Data Visualization

Về khách hàng:
( 64 nhận xét ) New Haven, United States

ID dự án: #35359469

Được trao cho:

reeeeeeee

This seems like a simple data processing + file reading/writing task. I’ve worked on similar projects before but not on bioinformatics. I have experience in Python and Matlab, you can check my github below: https://gi Thêm

$18 USD trong 7 ngày
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0.0
mahfouzm

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11 freelancer chào giá trung bình$33 cho công việc này

Valuesolutions

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torrikress2

✅✅✅ Full Experiences in Python and Visualization ✅✅✅ Hi, Dear! I read your requirement carefully. I can do your work perfectly. I can start Your work right now... Hope to discuss with you soon. Thanks & Best regards! h Thêm

$20 USD trong 1 ngày
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mircociaramella2

Expert HERE!!! Thanks for you job post! I just done a project such as yours so I can satisfy you perfectly with my skills and experiences. If you hire me, then you will never regret and I will do my best. I hope see yo Thêm

$20 USD trong 7 ngày
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eduardoherreral4

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perfomancedev

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$50 USD trong 3 ngày
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1.8
pinchstevea

Hello, I have read and understood the basics and prompts of this task. Given a chance, I will deliver a masterpiece. My experience in this field and completed orders allow me to work on this assignment efficiently. Kin Thêm

$30 USD trong 2 ngày
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